Colorado School of Mines

Post-Doctoral Fellow, Department of Chemical and Biological Engineering

Colorado School of Mines  •  $63k/yr  •  Colorado (Onsite)  •  1 hour ago
Apply
AI can make mistakes so check important info. Chat history is never stored.

Job Description

Engineering a world of possibilities

Post Doctoral Fellow

THE OPPORTUNITY

A postdoctoral scholar position is available in Professor Alexander Pak’s research group in the Chemical and Biological Engineering Department at the Colorado School of Mines. The postdoctoral scholar will contribute to a research program focused on (i) the development of data-driven (e.g., machine-learned) methods for coarse-graining of macromolecules and (ii) their application to energy transduction systems across biology. Of specific interest are methods that capture faithful dynamics under equilibrium and nonequilibrium conditions.

The successful candidate will hold a Ph.D. in chemical engineering, chemistry, physics, materials science, biophysics, applied mathematics, computer science, or related field. The candidate must have experience with molecular simulation, statistical mechanics, or closely related computational methods, as well as strong programming and scientific computing skills. The candidate should demonstrate the ability to conduct independent computational research, analyze complex numerical or simulation data, and communicate research effectively through scientific publications and presentations. Preferred qualifications include experience with molecular dynamics, coarse-grained or multiscale modeling, and machine learning or other data-driven methods. Familiarity with stochastic or nonequilibrium thermodynamics is particularly relevant. The successful candidate will have flexibility to develop new methodological and scientific directions within the broader goals of the project and will work in a collaborative, interdisciplinary environment with other members of the group and external collaborators.

RESPONSIBILITIES

  • Develop computational methodologies to improve the accuracy, transferability, and dynamical fidelity of low-resolution coarse-grained models of biomolecular systems
  • Apply computational strategies to characterize and control biomolecular self-organization, including protein reorganization during energy transduction processes
  • Develop, implement, and maintain open-source code for coarse-grained modeling and simulation
  • Prepare manuscripts for publication in peer-reviewed journals
  • Present research findings at conferences and symposia
  • Contribute to the preparation of technical reports and other deliverables for funding agencies
  • Contribute to the preparation of research proposals
  • Mentor graduate and undergraduate researchers and contribute to a collaborative research environment

JOB DEMANDS AND WORKING CONDITIONS

Must be able to relocate and work in-person in the laboratory

QUALIFICATIONS

Minimum Qualifications:

  • Ph.D. in chemical engineering, chemistry, physics, materials science, biophysics, applied mathematics, computer science, or related field, with demonstrated experience with molecular simulation, statistical mechanics, or closely related computational methods, as well as strong programming and scientific computing skills.
  • Knowledge of molecular simulation, statistical mechanics, and computational molecular science
  • Knowledge of molecular dynamics and the principles underlying coarse-graining and/or multiscale modeling
  • Ability to develop, implement, and critically evaluate new computational methodologies
  • Strong scientific programming, numerical analysis, and data analysis skills
  • Ability to independently formulate research questions, troubleshoot computational problems, and interpret simulation results
  • Ability to critically evaluate scientific literature and integrate concepts from multiple disciplines
  • Strong written and oral communication skills
  • Ability to work effectively both independently and as part of a collaborative, interdisciplinary team

Minimum Qualifications:

  • Experience with coarse-grained modeling, multiscale simulation, or the development of molecular simulation methods
  • Knowledge of stochastic and nonequilibrium dynamics or nonequilibrium statistical mechanics
  • Ability to connect mathematical or statistical descriptions of molecular dynamics with physically interpretable models
  • Familiarity with machine learning or other data-driven modeling approaches, particularly for molecular simulation or dynamical systems
  • Experience with molecular simulation software such as GROMACS, LAMMPS, or OpenMM and/or machine-learning frameworks such as Tensorflow, PyTorch, or JAX
  • Experience with high-performance computing environments, especially with GPU acceleration
  • Experience with reproducible scientific software development, including version control, documentation, and dissemination of scientific software
  • Ability to mentor and support graduate and undergraduate researchers

TOTAL REWARDS

Salary Rate: $62,500 annually

Mines takes into consideration a combination of candidate’s education, training and experience as well as the position’s scope and complexity, the discretion and latitude required in the role, work location, and external market and internal value when determining a salary level for potential new employees.

Benefits: Colorado School of Mines offers a robust portfolio of benefits for all employees. For this role, that includes:

  • Flexible health and dental care options
  • Generous sick/vacation time: 13 paid holidays per year – including a week-long winter break for the entire campus.
  • Fully vested retirement plan on first day of employment, with generous employer contribution
  • Tuition benefits (6 credits per year for employees, 50 percent discount for dependents)
  • Free RTD Ecopass for regional bus and lightrail

All Mines employees also have access to discount programs through the State of Colorado and free tickets for Mines Athletics home games, as well as access to the state-of-the-art Recreation Center (fitness classes and training, swimming pool and more) and equipment rentals through the Outdoor Rec Center. We are proud to have an on-campus daycare center. For more details about benefits at Mines, visit mines.edu/human-resources/benefits.

HOW TO APPLY

Applications must complete an online application (personal information, demographic information, veteran status) and upload the following (all required):

  • Upload a resume or CV
  • Upload a cover letter

Applicants will notice there is only one upload box for all materials. This posting may be used to fill more than one vacancy based on business needs. Contact Kathleen Feighny in HR at kfeighny@mines.edu​ with any application questions.

About Mines & Golden, CO

When the world looks for answers, the world looks to Mines.

Colorado School of Mines is a top-ranked public university solving the grand challenges facing our society, particularly those related to the Earth, energy and the environment. Founded in 1874 with specialties in mining and metallurgy, Mines’ scope and mission have continually expanded to meet the needs of industry and society. Today, we are the No. 40 public university in the nation, recognized for our innovation and undergraduate teaching in science, technology engineering and math (U.S. News and World Report, 2026).

Mines graduates are change makers, boundary breakers and problem solvers. Since our earliest days, a Mines education has been and continues to be a transformational opportunity, with one of the strongest returns on investment out there for talented STEM students of all backgrounds.

At the same time, Mines faculty members are pushing their fields in new directions, whether that’s manufacturing, space resources, quantum engineering, carbon capture or more. Mines was recently classified as a R1 “Very High Activity” research institution by Carnegie, a notable feat for any university but particularly one of our size.

That size – roughly 8,200 undergraduate and graduate students – also translates to a close-knit campus community, where employees have opportunities to get involved in multiple ways, continued professional learning is valued and everyone can make an impact.

Community Alliance groups bring together employees for professional development, networking, and community involvement, and all Mines employees also have access to the wealth of activities happening every day on campus – nationally-renowned speakers, special events and Mines traditions like Engineering Days, just to name a few.

And don’t get us started on our hometown. We are located in the heart of Golden, Colorado --with its charming historic downtown and nearby hiking trails – and in close proximity to all that Denver and the Rocky Mountains have to offer. That includes the sunny, high-altitude climate and outstanding outdoor recreation opportunities that make the Denver area an ideal place to live, work and play.

Are you looking for an inspiring, mission-driven workplace where you can contribute to solving the world’s problems and educating the next generation of change makers? Are you an individual who values a community where our individual perspectives and experiences enrich the educational and work experience?

Additional Information and Reasonable Accommodation Requests

It is the intent of Mines to comply with the applicable requirements of the Americans with Disabilities Act and the Americans with Disabilities Act Amendments Act of 2008, and their implementation rules and regulations, in support of equal opportunities for qualified applicants with disabilities. To meet this goal, Mines will make reasonable accommodations during the employment selection process and within our working environment.

If you are a qualified individual with a disability or a disabled veteran, you may request a reasonable accommodation if you are unable or limited in your ability to access job openings or apply for a job on our site as a result of your disability. You can request a reasonable accommodation by contacting our Human Resources team at hr@mines.edu or 303.273.3250 for assistance.

Successful completion of a background investigation is required for this position.

Equal Opportunity

Colorado School of Mines is committed to equal opportunity for all persons. Mines does not discriminate on the basis of age, sex, gender (including gender identity and gender expression), ancestry, creed, marital status, race, ethnicity, religion, national origin, disability, sexual orientation, genetic information, veteran status or current military service. Further, Mines does not retaliate against community members for filing complaints regarding or implicating any of these protected statuses.

Mines’ commitment to nondiscrimination, equal opportunity and equal access is reflected in the administration of its policies, procedures, programs and activities and in its efforts to achieve a talented student body and workforce.

Through its policies, procedures and resources, Mines complies with federal law, Colorado state law, administrative regulations, executive orders and other legal requirements to prevent discrimination (including harassment or retaliation) within the Mines campus community and to address potential allegations of inequality or concerns for safety.

Colorado's premier engineering and applied science university for 150 years and counting

Colorado School of Mines

About Colorado School of Mines

Industry
Unknown
Company Size
Unknown
Headquarters
Unknown
Year Founded
Unknown
Website
mines.edu
Social Media