Our client, a world leader in diagnostics
and life sciences, is looking for an
"Bioinformatics Software Engineer”
based out of South San Francisco, CA
.

Hybrid Role 2 days onsite

Company Benefits: Medical, Dental,
Vision, Paid Sick leave, 401K

Job Description:

We are seeking a Bioinformatics Software Engineer to support software systems and data workflows in a
Next-Generation Sequencing
(NGS)
laboratory environment. The role involves developing and maintaining applications and pipelines used for sequencing data processing, laboratory workflow management, and data analysis. The candidate will collaborate with scientists and bioinformaticians to ensure reliable data processing and scalable analysis workflows.

Key Responsibilities:

• 
  Develop and maintain software applications using
  Java
  and
  Python
  to support sequencing lab systems.

• 
  Build and support bioinformatics pipelines using
  Workflow Description Language (WDL)
  and
  Cromwell Workflow Engine
  .

• 
  Write and optimize queries in
  Oracle Database
  using SQL/PL-SQL for data processing and integration.

• 
  Develop automation scripts using
  Bash
  for data workflows and analysis tasks.

• 
  Integrate laboratory systems such as
  Laboratory Information Management System (LIMS)
  with sequencing platforms and analysis pipelines.

• 
  Support pipeline execution in HPC environments and cloud platforms like
  Amazon Web Services
  .

• 
  Troubleshoot pipeline performance and maintain documentation and version control using
  Git
  .

Qualifications:

• 
  Bachelor’s or Master’s degree in Computer Science, Bioinformatics, Computational Biology, or related field with
  3+ years of experience
  .

• 
  Strong experience with
  Java, Python, SQL/PL-SQL, and Bash scripting
  .

• 
  Experience with
  bioinformatics pipelines, workflow automation, and scientific data systems
  .

• 
  Knowledge of NGS workflows, HPC environments, and container technologies such as
  Docker
  is a plus.

If interested, please send us your updated
resume at

hr@dawarconsulting.com
/
kavitha@dawarconsulting.com